Length (hg19) : 11,900,000 bases - Length (hg38) : 11,911,321 bases


skin eye skin brain/cognition skin skin skin skin musculature skin skin skin skin skin skin

CNV-Hub AChro-Puce
Likely pathogenic



AChro-Puce Criteria taken into account 1

Class

2 Major

CNV inherited from Asymptomatic parent

Class

4 Major

De novo CNV or inherited from Symptomatic parent

Class

4 Major

Haploinsufficient gene

Class

4 Minor

No occurrence in DGV / DGV-Gold > 50 % overlaps

Class

4 Minor

CNV length of 1 Mb or more


ISV 2

XCNV 3

ClassifyCNV ACMG 4

AnnotSV ACMG 5

ACMG criteria

ClassifyCNV

2A
+ 1

Complete overlap of an established HI gene/genomic region.

2H
+ 0.15

Multiple HI predictors suggest that AT LEAST ONE gene in the interval is haploinsufficient (HI).

3C
+ 0.9

Number of protein-coding RefSeq genes wholly or partially included in the CNV region.

5B
-0.45

Patient with specific, well-defined phenotype and no family history. CNV is inherited from an apparently unaffected parent.

5D
+ 0.45

CNV segregates with a consistent phenotype observed in the patient’s family.

AnnotSV

2A
+ 1

Complete overlap of an established HI gene/genomic region.

3C
+ 0.9

Number of protein-coding RefSeq genes wholly or partially included in the CNV region.

5B
-0.45

Patient with specific, well-defined phenotype and no family history. CNV is inherited from an apparently unaffected parent.

5D
+ 0.45

CNV segregates with a consistent phenotype observed in the patient’s family.


Diseases :

Gene Disease Source Inheritance
SH2B1 Severe early-onset obesity-insulin resistance syndrome due to SH2B1 deficiency Orphanet Autosomal dominant
KIF22 Spondyloepimetaphyseal dysplasia with multiple dislocations Orphanet Autosomal dominant
TBX6 Autosomal dominant spondylocostal dysostosis Orphanet Autosomal dominant
SRCAP Floating-Harbor syndrome Orphanet Autosomal dominant
STX1B Generalized epilepsy with febrile seizures-plus Orphanet Autosomal dominant
ATP2A1 Brody myopathy Orphanet Autosomal dominant, Autosomal recessive
SLC5A2 Familial renal glucosuria Orphanet Autosomal dominant, Autosomal recessive
CD19 Common variable immunodeficiency Orphanet Autosomal dominant, Autosomal recessive, Not applicable
KAT8 Non-specific syndromic intellectual disability Orphanet Autosomal dominant, Autosomal recessive, X-linked recessive
PRRT2 Paroxysmal exertion-induced dyskinesia Orphanet Autosomal dominant, Not applicable
ARMC5 Cushing syndrome due to macronodular adrenal hyperplasia Orphanet Autosomal dominant, Not applicable
IL21R Combined immunodeficiency due to IL21R deficiency Orphanet Autosomal recessive
KATNIP Joubert syndrome Orphanet Autosomal recessive
CLN3 CLN3 disease Orphanet Autosomal recessive
TUFM Combined oxidative phosphorylation defect type 4 Orphanet Autosomal recessive
ALDOA Glycogen storage disease due to aldolase A deficiency Orphanet Autosomal recessive
CORO1A Severe combined immunodeficiency due to CORO1A deficiency Orphanet Autosomal recessive
HSD3B7 Congenital bile acid synthesis defect type 1 Orphanet Autosomal recessive
VKORC1 Hereditary combined deficiency of vitamin K-dependent clotting factors Orphanet Autosomal recessive
BCKDK Autism-epilepsy syndrome due to branched chain ketoacid dehydrogenase kinase deficiency Orphanet Autosomal recessive
COX6A2 Isolated cytochrome C oxidase deficiency Orphanet Autosomal recessive, Mitochondrial inheritance
PHKG2 Glycogen storage disease due to liver phosphorylase kinase deficiency Orphanet Autosomal recessive, X-linked recessive
FUS Myxoid/round cell liposarcoma Orphanet Not applicable
ITGAM Systemic lupus erythematosus Orphanet Not applicable
LAT Severe combined immunodeficiency due to LAT deficiency Orphanet
MYL11 mylpf arthrogryposis (monoallelic) DDG2P
SETD1A intellectual disability DDG2P

ClinGen

0 benign CNV
0 likely benign CNV
0 uncertain CNV
0 likely pathogenic CNV
0 pathogenic CNV

70% Overlaps


Decipher

0 benign CNV
0 unknown CNV
0 uncertain CNV
0 pathogenic CNV

70% Overlaps

DGV-Gold

0

80% Overlaps

0

50% Overlaps


DGV

0

80% Overlaps

0

50% Overlaps


Coe & Al study 6

0

Patient cases
70% Overlaps

0

Controls
70% Overlaps


Genes in OMIM

107


Sources and references

1 : AChroPuce Consortium Recommandations pour l’interpretation Clinique des CNV (Copy Number Variations) Septembre 2022.

2 : Automated prediction of the clinical impact of structural copy number variations : M. Gažiová, T. Sládeček, O. Pös, M. Števko, W. Krampl, Z. Pös, R. Hekel, M. Hlavačka, M. Kucharík, J. Radvánszky, J. Budiš & T. Szemes View article

3 : Zhang L, Shi J, Ouyang J, Zhang R, Tao Y, Yuan D, et al X CNV genome wide prediction of the pathogenicity of copy number variations Genome Med 2021 13 132.

4 : Gurbich, T.A., Ilinsky, V.V. ClassifyCNV: a tool for clinical annotation of copy-number variants. Sci Rep 10, 20375 (2020). View article

5 : Geoffroy V, Herenger Y, Kress A, et al. AnnotSV: an integrated tool for structural variations annotation. Bioinforma Oxf Engl. 2018;34(20):3572-3574. doi:10.1093/bioinformatics/bty304

6 : Coe BP, Witherspoon K, Rosenfeld JA, van Bon BWM, Vulto van Silfhout AT, Bosco P, et al Refining analyses of copy number variation identifies specific genes associated with developmental delay Nat Genet 2014 46 1063 71

7 : Collins RL, Glessner JT, Porcu E, Lepamets M, Brandon R, Lauricella C, et al A cross disorder dosage sensitivity map of the human genome Cell 2022 185 3041 3055 e 25

Not Working? You Can Delete and Recompute the CNV

0 Microdeletion and microduplication syndromes from litterature (>= 70% only)


107 OMIM Gene overlap(s)

Download genes as .csv

HS3ST4 NM_006040.3   Whole gene - Size : 445,726 bases


pLI : 0.8 LOEUF : 0.49 sHet : 0.015 pHaplo : 0.53 pTriplo : 0.44
Location : 25,703,280 - 26,149,006

Database :

DecipherGenomics OMIM:604059 GTEx Portal Human Protein Atlas Ensembl

GSG1L NM_001109763.2   Whole gene - Size : 276,186 bases


pLI : 0.77 LOEUF : 0.46 sHet : 0.035 pHaplo : 0.51 pTriplo : 0.58
Location : 27,798,849 - 28,075,035

Database :

DecipherGenomics OMIM:617161 GTEx Portal Human Protein Atlas Ensembl

KATNIP NM_015202.5   Whole gene - Size : 230,211 bases


pLI : 0 LOEUF : 0.91
Location : 27,561,454 - 27,791,665

Disease : Joubert syndrome

Source : Orphanet

Database :

DecipherGenomics OMIM:616650 Orphanet:475 HGNC:29068 PMID:26714646 GTEx Portal Human Protein Atlas Ensembl

TNRC6A NM_014494.4   Exons: 1->25 / 25 - Size : 217,423 bases


pLI : 1 LOEUF : 0.16 sHet : 0.121 pHaplo : 1 pTriplo : 0.91
Location : 24,621,530 - 24,838,953

Database :

DecipherGenomics OMIM:610739 GTEx Portal Human Protein Atlas Ensembl

XPO6 NM_015171.4   Whole gene - Size : 113,989 bases


pLI : 1 LOEUF : 0.08 sHet : 0.374 pHaplo : 0.97 pTriplo : 0.71
Location : 28,109,297 - 28,223,286

Database :

DecipherGenomics OMIM:608411 GTEx Portal Human Protein Atlas Ensembl

ARHGAP17 NM_001006634.3   Whole gene - Size : 96,277 bases


pLI : 0.02 LOEUF : 0.44 sHet : 0.151 pHaplo : 0.8 pTriplo : 0.69
Location : 24,930,710 - 25,026,987

Database :

DecipherGenomics OMIM:608293 GTEx Portal Human Protein Atlas Ensembl

GTF3C1 NM_001520.4   Whole gene - Size : 90,358 bases


pLI : 1 LOEUF : 0.17 sHet : 0.058 pHaplo : 0.98 pTriplo : 0.98
Location : 27,470,876 - 27,561,234

Database :

DecipherGenomics OMIM:603246 GTEx Portal Human Protein Atlas Ensembl

ITGAM NM_000632.4   Whole gene - Size : 72,925 bases


pLI : 0 LOEUF : 0.64 sHet : 0.005 pHaplo : 0.1 pTriplo : 0.21
Location : 31,271,288 - 31,344,213

Disease : Systemic lupus erythematosus

Source : Orphanet

Database :

DecipherGenomics PanelApp OMIM:120980 Orphanet:536 HGNC:6149 PMID:19286673 PMID:23917156 PMID:23943494 GTEx Portal Human Protein Atlas Ensembl

LCMT1 NM_016309.3   Whole gene - Size : 66,500 bases


pLI : 0 LOEUF : 0.87 sHet : 0.078 pHaplo : 0.48 pTriplo : 0.34
Location : 25,123,052 - 25,189,552

Database :

DecipherGenomics OMIM:610286 GTEx Portal Human Protein Atlas Ensembl

SLC5A11 NM_001352248.3   Whole gene - Size : 65,787 bases


pLI : 0 LOEUF : 1.05 pHaplo : 0.24 pTriplo : 0.5
Location : 24,857,162 - 24,922,949

Database :

DecipherGenomics OMIM:610238 GTEx Portal Human Protein Atlas Ensembl

SBK1 NM_001024401.3   Whole gene - Size : 64,603 bases


pLI : 0.37 LOEUF : 0.7 sHet : 0.031 pHaplo : 0.49 pTriplo : 0.66
Location : 28,270,567 - 28,335,170

Database :

DecipherGenomics OMIM:620212 GTEx Portal Human Protein Atlas Ensembl

BCL7C NM_004765.4   Whole gene - Size : 60,676 bases


pLI : 0.08 LOEUF : 0.72 sHet : 0.022 pHaplo : 0.1 pTriplo : 0.64
Location : 30,844,947 - 30,905,623

Database :

DecipherGenomics OMIM:605847 GTEx Portal Human Protein Atlas Ensembl

IL4R NM_000418.4   Whole gene - Size : 51,110 bases


pLI : 0 LOEUF : 0.83 sHet : 0.019 pHaplo : 0.37 pTriplo : 0.21
Location : 27,324,989 - 27,376,099

Database :

DecipherGenomics PanelApp OMIM:147781 GTEx Portal Human Protein Atlas Ensembl

ITGAL NM_002209.3   Whole gene - Size : 50,909 bases


pLI : 0 LOEUF : 0.41 sHet : 0.027 pHaplo : 0.23 pTriplo : 0.24
Location : 30,483,979 - 30,534,888

Database :

DecipherGenomics PanelApp OMIM:153370 GTEx Portal Human Protein Atlas Ensembl

IL21R NM_181078.3   Whole gene - Size : 49,868 bases


pLI : 1 LOEUF : 0.2 sHet : 0.217 pHaplo : 0.69 pTriplo : 0.33
Location : 27,413,495 - 27,463,363

Disease : Combined immunodeficiency due to IL21R deficiency

Source : Orphanet

Database :

DecipherGenomics PanelApp OMIM:605383 Orphanet:357329 HGNC:6006 PMID:23440042 GTEx Portal Human Protein Atlas Ensembl

EIF3C NM_003752.5   Whole gene - Size : 47,169 bases


pLI : 0 LOEUF : 1.93 pHaplo : 0.11 pTriplo : 0.28
Location : 28,699,879 - 28,747,048

Database :

DecipherGenomics OMIM:603916 GTEx Portal Human Protein Atlas Ensembl

NSMCE1 NM_145080.4   Whole gene - Size : 43,778 bases


pLI : 0 LOEUF : 1.18 sHet : 0.014 pHaplo : 0.23 pTriplo : 0.26
Location : 27,236,315 - 27,280,093

Database :

DecipherGenomics OMIM:617263 GTEx Portal Human Protein Atlas Ensembl

ZNF267 NM_003414.6   Whole gene - Size : 43,550 bases


pLI : 0.02 LOEUF : 1.55 sHet : 0.011 pHaplo : 0.12 pTriplo : 0.25
Location : 31,885,128 - 31,928,678

Database :

DecipherGenomics OMIM:604752 GTEx Portal Human Protein Atlas Ensembl

SRCAP NM_006662.3   Whole gene - Size : 43,200 bases


pLI : 1 LOEUF : 0.1 sHet : 0.323 pHaplo : 0.99 pTriplo : 1
Location : 30,709,530 - 30,752,730

Disease : Floating-Harbor syndrome

Source : Orphanet

Database :

DecipherGenomics PanelApp OMIM:611421 Orphanet:2044 HGNC:16974 PMID:22965468 GTEx Portal Human Protein Atlas Ensembl


SFARI (Autism Database) :

Gene Score : 1
Is Not Syndromic
No EAGLE Score
Reports : 8

SGF29 NM_138414.3   Whole gene - Size : 37,875 bases


pLI : 0 LOEUF : 0.82
Location : 28,565,236 - 28,603,111

Database :

DecipherGenomics OMIM:613374 GTEx Portal Human Protein Atlas Ensembl

QPRT NM_014298.6   Whole gene - Size : 35,420 bases


pLI : 0 LOEUF : 1.1 sHet : 0.13 pHaplo : 0.17 pTriplo : 0.16
Location : 29,674,600 - 29,710,020

Database :

DecipherGenomics OMIM:606248 GTEx Portal Human Protein Atlas Ensembl

ITGAD NM_005353.3   Whole gene - Size : 33,170 bases


pLI : 0 LOEUF : 0.87 pHaplo : 0.11 pTriplo : 0.26
Location : 31,404,656 - 31,437,826

Database :

DecipherGenomics OMIM:602453 GTEx Portal Human Protein Atlas Ensembl

RABEP2 NM_024816.3   Whole gene - Size : 32,105 bases


pLI : 0 LOEUF : 0.57 sHet : 0.015 pHaplo : 0.3 pTriplo : 0.53
Location : 28,915,742 - 28,947,847

Database :

DecipherGenomics OMIM:611869 GTEx Portal Human Protein Atlas Ensembl

TLCD3B NM_031478.6   Whole gene - Size : 28,551 bases


pLI : 0.66 LOEUF : 0.52
Location : 30,035,748 - 30,064,299

Database :

DecipherGenomics OMIM:615175 GTEx Portal Human Protein Atlas Ensembl

SEZ6L2 NM_001243332.2   Whole gene - Size : 28,391 bases


pLI : 0.12 LOEUF : 0.42 sHet : 0.07 pHaplo : 0.22 pTriplo : 0.69
Location : 29,882,480 - 29,910,871

Database :

DecipherGenomics PanelApp OMIM:616667 GTEx Portal Human Protein Atlas Ensembl


SFARI (Autism Database) :

Gene Score : 2
Is Not Syndromic
No EAGLE Score
Reports : 6

ITGAX NM_000887.5   Whole gene - Size : 27,865 bases


pLI : 0 LOEUF : 0.72 sHet : 0.011 pHaplo : 0.29 pTriplo : 0.12
Location : 31,366,455 - 31,394,320

Database :

DecipherGenomics OMIM:151510 GTEx Portal Human Protein Atlas Ensembl

MVP NM_005115.5   Whole gene - Size : 27,645 bases


pLI : 0 LOEUF : 0.73 sHet : 0.006 pHaplo : 0.16 pTriplo : 0.67
Location : 29,831,715 - 29,859,360

Database :

DecipherGenomics OMIM:605088 GTEx Portal Human Protein Atlas Ensembl

SH2B1 NM_001387430.1   Whole gene - Size : 27,612 bases


pLI : 1 LOEUF : 0.23 sHet : 0.101 pHaplo : 0.5 pTriplo : 0.96
Location : 28,857,921 - 28,885,533

Disease : Severe early-onset obesity-insulin resistance syndrome due to SH2B1 deficiency

Source : Orphanet

Database :

DecipherGenomics PanelApp OMIM:608937 Orphanet:329249 HGNC:30417 PMID:23160192 GTEx Portal Human Protein Atlas Ensembl

SETD1A NM_014712.3   Whole gene - Size : 26,910 bases

brain/cognition

pLI : 1 LOEUF : 0.14 sHet : 0.208 pHaplo : 0.95 pTriplo : 1
Location : 30,969,075 - 30,995,985

Disease : intellectual disability

Source : DDG2P

Database :

DecipherGenomics PanelApp OMIM:611052 GTEx Portal Human Protein Atlas Ensembl


SFARI (Autism Database) :

Gene Score : 1
Is Not Syndromic
EAGLE Score : 4.35
Reports : 7

ATP2A1 NM_004320.6   Whole gene - Size : 26,061 bases


pLI : 0 LOEUF : 0.85 sHet : 0.005 pHaplo : 0.55 pTriplo : 0.37
Location : 28,889,726 - 28,915,787

Disease : Brody myopathy

Source : Orphanet

Database :

DecipherGenomics PanelApp OMIM:108730 Orphanet:53347 HGNC:811 PMID:10914677 GTEx Portal Human Protein Atlas Ensembl

FBXL19 NM_001382779.1   Whole gene - Size : 25,728 bases


pLI : 1 LOEUF : 0.1 pHaplo : 0.86 pTriplo : 1
Location : 30,934,376 - 30,960,104

Database :

DecipherGenomics OMIM:609085 GTEx Portal Human Protein Atlas Ensembl

CLN3 NM_001042432.2   Whole gene - Size : 21,464 bases

eye brain/cognition

pLI : 0 LOEUF : 0.91 sHet : 0.007 pHaplo : 0.18 pTriplo : 0.31
Location : 28,485,432 - 28,506,896

Disease : CLN3 disease

Source : Orphanet

Database :

DecipherGenomics PanelApp OMIM:607042 Orphanet:228346 HGNC:2074 PMID:21990111 GTEx Portal Human Protein Atlas Ensembl

ZNF689 NM_138447.3   Whole gene - Size : 21,454 bases


pLI : 0.42 LOEUF : 0.5 sHet : 0.056 pHaplo : 0.17 pTriplo : 0.82
Location : 30,613,879 - 30,635,333

Database :

DecipherGenomics OMIM:618033 GTEx Portal Human Protein Atlas Ensembl

STX1B NM_052874.5   Whole gene - Size : 21,382 bases


pLI : 0.99 LOEUF : 0.27 sHet : 0.065 pHaplo : 0.36 pTriplo : 0.91
Location : 31,000,577 - 31,021,959

Disease : Generalized epilepsy with febrile seizures-plus

Source : Orphanet

Database :

DecipherGenomics PanelApp OMIM:601485 Orphanet:36387 HGNC:18539 PMID:25362483 GTEx Portal Human Protein Atlas Ensembl

KCTD13 NM_178863.5   Whole gene - Size : 21,224 bases


pLI : 0 LOEUF : 0.95 sHet : 0.171
Location : 29,916,333 - 29,937,557

Database :

DecipherGenomics PanelApp OMIM:608947 GTEx Portal Human Protein Atlas Ensembl


SFARI (Autism Database) :

Gene Score : 2
Is Not Syndromic
No EAGLE Score
Reports : 8

TAOK2 NM_016151.4   Whole gene - Size : 18,393 bases


pLI : 1 LOEUF : 0.24 sHet : 0.172 pHaplo : 0.56 pTriplo : 1
Location : 29,985,189 - 30,003,582

Database :

DecipherGenomics PanelApp OMIM:613199 GTEx Portal Human Protein Atlas Ensembl


SFARI (Autism Database) :

Gene Score : 2
Is Not Syndromic
No EAGLE Score
Reports : 7

KDM8 NM_024773.3   Whole gene - Size : 18,260 bases


pLI : 0 LOEUF : 0.83 sHet : 0.022 pHaplo : 0.62 pTriplo : 0.52
Location : 27,214,829 - 27,233,089

Database :

DecipherGenomics OMIM:611917 GTEx Portal Human Protein Atlas Ensembl

SEPTIN1 NM_001365977.2   Whole gene - Size : 17,856 bases


pLI : 0 LOEUF : 0.97
Location : 30,389,456 - 30,407,312

Database :

DecipherGenomics OMIM:612897 GTEx Portal Human Protein Atlas Ensembl

DOC2A NM_003586.3   Whole gene - Size : 17,756 bases


pLI : 0.01 LOEUF : 0.69 sHet : 0.02 pHaplo : 0.16 pTriplo : 0.3
Location : 30,016,835 - 30,034,591

Database :

DecipherGenomics OMIM:604567 GTEx Portal Human Protein Atlas Ensembl

TRIM72 NM_001008274.4   Whole gene - Size : 17,446 bases


pLI : 0 LOEUF : 1.05 sHet : 0.005 pHaplo : 0.43 pTriplo : 0.65
Location : 31,225,412 - 31,242,858

Database :

DecipherGenomics OMIM:613288 GTEx Portal Human Protein Atlas Ensembl

KAT8 NM_032188.3   Whole gene - Size : 16,904 bases


pLI : 0.38 LOEUF : 0.44 sHet : 0.019 pHaplo : 0.25 pTriplo : 0.99
Location : 31,125,810 - 31,142,714

Disease : Non-specific syndromic intellectual disability

Source : Orphanet

Database :

DecipherGenomics PanelApp OMIM:609912 Orphanet:528084 HGNC:17933 PMID:31794431 GTEx Portal Human Protein Atlas Ensembl

NFATC2IP NM_032815.4   Whole gene - Size : 16,285 bases


pLI : 0 LOEUF : 1.02 sHet : 0.015 pHaplo : 0.17 pTriplo : 0.66
Location : 28,962,128 - 28,978,413

Database :

DecipherGenomics OMIM:614525 GTEx Portal Human Protein Atlas Ensembl

KIF22 NM_007317.3   Whole gene - Size : 14,658 bases


pLI : 0 LOEUF : 0.85 sHet : 0.019 pHaplo : 0.15 pTriplo : 0.65
Location : 29,802,048 - 29,816,706

Disease : Spondyloepimetaphyseal dysplasia with multiple dislocations

Source : Orphanet

Database :

DecipherGenomics PanelApp OMIM:603213 Orphanet:93360 HGNC:6391 PMID:22152677 GTEx Portal Human Protein Atlas Ensembl

RNF40 NM_014771.4   Whole gene - Size : 14,562 bases


pLI : 1 LOEUF : 0.24 sHet : 0.004 pHaplo : 0.53 pTriplo : 0.99
Location : 30,773,066 - 30,787,628

Database :

DecipherGenomics OMIM:607700 GTEx Portal Human Protein Atlas Ensembl

ATXN2L NM_007245.4   Whole gene - Size : 14,238 bases


pLI : 1 LOEUF : 0.17 sHet : 0.387 pHaplo : 0.96 pTriplo : 0.98
Location : 28,834,320 - 28,848,558

Database :

DecipherGenomics PanelApp OMIM:607931 GTEx Portal Human Protein Atlas Ensembl

ZNF668 NM_024706.5   Whole gene - Size : 13,397 bases


pLI : 0.13 LOEUF : 0.57 sHet : 0.022 pHaplo : 0.25 pTriplo : 0.78
Location : 31,072,164 - 31,085,561

Database :

DecipherGenomics PanelApp OMIM:617103 GTEx Portal Human Protein Atlas Ensembl

TBC1D10B NM_015527.4   Whole gene - Size : 13,392 bases


pLI : 1 LOEUF : 0.21 sHet : 0.093 pHaplo : 0.53 pTriplo : 0.98
Location : 30,368,423 - 30,381,815

Database :

DecipherGenomics OMIM:613620 GTEx Portal Human Protein Atlas Ensembl

AQP8 NM_001169.3   Whole gene - Size : 13,201 bases


pLI : 0 LOEUF : 1.12 sHet : 0.02 pHaplo : 0.32 pTriplo : 0.53
Location : 25,227,052 - 25,240,253

Database :

DecipherGenomics OMIM:603750 GTEx Portal Human Protein Atlas Ensembl

PHKG2 NM_000294.3   Whole gene - Size : 12,883 bases


pLI : 0 LOEUF : 0.66 sHet : 0.028 pHaplo : 0.1 pTriplo : 0.9
Location : 30,759,614 - 30,772,497

Disease : Glycogen storage disease due to liver phosphorylase kinase deficiency

Source : Orphanet

Database :

DecipherGenomics PanelApp OMIM:172471 Orphanet:264580 HGNC:8931 GTEx Portal Human Protein Atlas Ensembl

IL27 NM_145659.3   Whole gene - Size : 12,689 bases


pLI : 0.78 LOEUF : 0.51 sHet : 0.139 pHaplo : 0.4 pTriplo : 0.34
Location : 28,510,683 - 28,523,372

Database :

DecipherGenomics OMIM:608273 GTEx Portal Human Protein Atlas Ensembl

FBRS NM_001105079.3   Whole gene - Size : 12,379 bases


pLI : 1 LOEUF : 0.16 pHaplo : 0.53 pTriplo : 0.9
Location : 30,669,752 - 30,682,131

Database :

DecipherGenomics PanelApp OMIM:608601 GTEx Portal Human Protein Atlas Ensembl

FUS NM_004960.4   Whole gene - Size : 11,467 bases


pLI : 1 LOEUF : 0.24 sHet : 0.314 pHaplo : 0.9 pTriplo : 0.94
Location : 31,191,459 - 31,202,926

Disease : Myxoid/round cell liposarcoma

Source : Orphanet

Database :

DecipherGenomics PanelApp OMIM:137070 Orphanet:99967 HGNC:4010 GTEx Portal Human Protein Atlas Ensembl

PRSS36 NM_173502.5   Whole gene - Size : 11,157 bases


pLI : 0 LOEUF : 1.07 sHet : 0.004 pHaplo : 0.21 pTriplo : 0.68
Location : 31,150,247 - 31,161,404

Database :

DecipherGenomics OMIM:610560 GTEx Portal Human Protein Atlas Ensembl

SPNS1 NM_032038.3   Whole gene - Size : 10,327 bases


pLI : 0.02 LOEUF : 0.6 sHet : 0.073 pHaplo : 0.07 pTriplo : 0.73
Location : 28,985,542 - 28,995,869

Database :

DecipherGenomics OMIM:612583 GTEx Portal Human Protein Atlas Ensembl

STX4 NM_004604.5   Whole gene - Size : 10,086 bases


pLI : 0 LOEUF : 1.16 sHet : 0.004 pHaplo : 0.06 pTriplo : 0.34
Location : 31,044,210 - 31,054,296

Database :

DecipherGenomics PanelApp OMIM:186591 GTEx Portal Human Protein Atlas Ensembl

ZNF646 NM_014699.4   Whole gene - Size : 9,774 bases


pLI : 0 LOEUF : 0.52 sHet : 0.065 pHaplo : 0.33 pTriplo : 0.8
Location : 31,085,743 - 31,095,517

Database :

DecipherGenomics OMIM:619299 GTEx Portal Human Protein Atlas Ensembl

MAPK3 NM_002746.3   Whole gene - Size : 9,401 bases


pLI : 0.04 LOEUF : 0.61 sHet : 0.026 pHaplo : 0.08 pTriplo : 0.95
Location : 30,125,426 - 30,134,827

Database :

DecipherGenomics PanelApp OMIM:601795 GTEx Portal Human Protein Atlas Ensembl


SFARI (Autism Database) :

Gene Score : 2
Is Not Syndromic
No EAGLE Score
Reports : 6

PPP4C NM_002720.3   Whole gene - Size : 9,398 bases


pLI : 0.46 LOEUF : 0.49 sHet : 0.065 pHaplo : 0.34 pTriplo : 0.99
Location : 30,087,299 - 30,096,697

Database :

DecipherGenomics OMIM:602035 GTEx Portal Human Protein Atlas Ensembl

ARMC5 NM_001105247.2   Whole gene - Size : 9,086 bases


pLI : 0.11 LOEUF : 0.49 sHet : 0.039 pHaplo : 0.3 pTriplo : 0.8
Location : 31,469,401 - 31,478,487

Disease : Cushing syndrome due to macronodular adrenal hyperplasia

Source : Orphanet

Database :

DecipherGenomics PanelApp OMIM:615549 Orphanet:189427 HGNC:25781 PMID:24283224 GTEx Portal Human Protein Atlas Ensembl

SULT1A1 NM_001055.4   Whole gene - Size : 9,083 bases


pLI : 0 LOEUF : 1.54 sHet : 0.005 pHaplo : 0.29 pTriplo : 0.41
Location : 28,616,517 - 28,625,600

Database :

DecipherGenomics OMIM:171150 GTEx Portal Human Protein Atlas Ensembl

ZNF629 NM_001080417.3   Whole gene - Size : 8,749 bases


pLI : 1 LOEUF : 0.17 sHet : 0.234 pHaplo : 0.56 pTriplo : 0.96
Location : 30,789,777 - 30,798,526

Database :

DecipherGenomics OMIM:619587 GTEx Portal Human Protein Atlas Ensembl

GDPD3 NM_024307.3   Whole gene - Size : 8,727 bases


pLI : 0 LOEUF : 1.51 sHet : 0.004 pHaplo : 0.13 pTriplo : 0.35
Location : 30,116,131 - 30,124,858

Database :

DecipherGenomics OMIM:616318 GTEx Portal Human Protein Atlas Ensembl

SPN NM_003123.6   Whole gene - Size : 7,897 bases


pLI : 0.01 LOEUF : 1.94 sHet : 0.031 pHaplo : 0.09 pTriplo : 0.16
Location : 29,674,300 - 29,682,197

Database :

DecipherGenomics OMIM:182160 GTEx Portal Human Protein Atlas Ensembl

SLC5A2 NM_003041.4   Whole gene - Size : 7,858 bases


pLI : 0 LOEUF : 1.12 sHet : 0.007 pHaplo : 0.23 pTriplo : 0.38
Location : 31,494,323 - 31,502,181

Disease : Familial renal glucosuria

Source : Orphanet

Database :

DecipherGenomics PanelApp OMIM:182381 Orphanet:69076 HGNC:11037 PMID:14614622 PMID:21165652 PMID:24255686 GTEx Portal Human Protein Atlas Ensembl

ORAI3 NM_152288.3   Whole gene - Size : 7,393 bases


pLI : 0.03 LOEUF : 1.23 sHet : 0.006 pHaplo : 0.14 pTriplo : 0.49
Location : 30,960,389 - 30,967,782

Database :

DecipherGenomics OMIM:610930 GTEx Portal Human Protein Atlas Ensembl

CD19 NM_001770.6   Whole gene - Size : 7,377 bases


pLI : 0.9 LOEUF : 0.35 sHet : 0.047 pHaplo : 0.4 pTriplo : 0.34
Location : 28,943,286 - 28,950,663

Disease : Common variable immunodeficiency

Source : Orphanet

Database :

DecipherGenomics PanelApp OMIM:107265 Orphanet:1572 HGNC:1633 GTEx Portal Human Protein Atlas Ensembl

MYL11 NM_013292.5   Whole gene - Size : 7,057 bases

musculature

pLI : 0.76 LOEUF : 0.52
Location : 30,382,255 - 30,389,312

Disease : mylpf arthrogryposis (monoallelic)

Source : DDG2P

Database :

DecipherGenomics OMIM:617378 GTEx Portal Human Protein Atlas Ensembl

CTF1 NM_001330.5   Whole gene - Size : 6,933 bases


pLI : 0.04 LOEUF : 1.74 pHaplo : 0.16 pTriplo : 0.22
Location : 30,907,935 - 30,914,868

Database :

DecipherGenomics PanelApp OMIM:600435 GTEx Portal Human Protein Atlas Ensembl

BCKDK NM_005881.4   Whole gene - Size : 6,684 bases


pLI : 0 LOEUF : 0.87 sHet : 0.016 pHaplo : 0.07 pTriplo : 0.68
Location : 31,117,428 - 31,124,112

Disease : Autism-epilepsy syndrome due to branched chain ketoacid dehydrogenase kinase deficiency

Source : Orphanet

Database :

DecipherGenomics PanelApp OMIM:614901 Orphanet:308410 HGNC:16902 PMID:22956686 GTEx Portal Human Protein Atlas Ensembl


SFARI (Autism Database) :

Gene Score : 1
Is Not Syndromic
EAGLE Score : 3.1
Reports : 6

DCTPP1 NM_024096.2   Whole gene - Size : 6,415 bases


pLI : 0.46 LOEUF : 0.84 sHet : 0.017 pHaplo : 0.16 pTriplo : 0.59
Location : 30,434,936 - 30,441,351

Database :

DecipherGenomics OMIM:615840 GTEx Portal Human Protein Atlas Ensembl

TGFB1I1 NM_001042454.3   Whole gene - Size : 6,375 bases


pLI : 0.03 LOEUF : 0.58 sHet : 0.01 pHaplo : 0.35 pTriplo : 0.5
Location : 31,482,906 - 31,489,281

Database :

DecipherGenomics OMIM:602353 GTEx Portal Human Protein Atlas Ensembl

PAGR1 NM_024516.4   Whole gene - Size : 6,337 bases


pLI : 0.74 LOEUF : 0.54 sHet : 0.013 pHaplo : 0.4 pTriplo : 0.59
Location : 29,827,473 - 29,833,810

Database :

DecipherGenomics OMIM:612033 GTEx Portal Human Protein Atlas Ensembl

NUPR1 NM_012385.3   Whole gene - Size : 6,300 bases


pLI : 0 LOEUF : 1.88 sHet : 0.006 pHaplo : 0.17 pTriplo : 0.41
Location : 28,544,029 - 28,550,329

Database :

DecipherGenomics OMIM:614812 GTEx Portal Human Protein Atlas Ensembl

ALDOA NM_001243177.4   Whole gene - Size : 6,293 bases

musculature

pLI : 0 LOEUF : 0.76 sHet : 0.03 pHaplo : 0.19 pTriplo : 0.31
Location : 30,075,485 - 30,081,778

Disease : Glycogen storage disease due to aldolase A deficiency

Source : Orphanet

Database :

DecipherGenomics PanelApp OMIM:103850 Orphanet:57 HGNC:414 GTEx Portal Human Protein Atlas Ensembl

CORO1A NM_007074.4   Whole gene - Size : 6,249 bases


pLI : 0.97 LOEUF : 0.32 sHet : 0.07 pHaplo : 0.24 pTriplo : 0.73
Location : 30,194,148 - 30,200,397

Disease : Severe combined immunodeficiency due to CORO1A deficiency

Source : Orphanet

Database :

DecipherGenomics PanelApp OMIM:605000 Orphanet:228003 HGNC:2252 PMID:23522482 GTEx Portal Human Protein Atlas Ensembl


SFARI (Autism Database) :

Gene Score : 1
Is Not Syndromic
EAGLE Score : 0.7
Reports : 2

PRSS53 NM_001039503.3   Whole gene - Size : 6,191 bases


pLI : 0 LOEUF : 1.36 sHet : 0.004 pHaplo : 0.22 pTriplo : 0.66
Location : 31,094,758 - 31,100,949

Database :

DecipherGenomics OMIM:610561 GTEx Portal Human Protein Atlas Ensembl

TBX6 NM_004608.4   Whole gene - Size : 6,131 bases


pLI : 0.01 LOEUF : 0.69 sHet : 0.01 pHaplo : 0.14 pTriplo : 0.57
Location : 30,097,114 - 30,103,245

Disease : Autosomal dominant spondylocostal dysostosis

Source : Orphanet

Database :

DecipherGenomics PanelApp OMIM:602427 Orphanet:1797 HGNC:11605 PMID:23335591 GTEx Portal Human Protein Atlas Ensembl

LAT NM_001014987.2   Whole gene - Size : 5,958 bases


pLI : 0.02 LOEUF : 0.67 sHet : 0.042 pHaplo : 0.17 pTriplo : 0.43
Location : 28,996,147 - 29,002,105

Disease : Severe combined immunodeficiency due to LAT deficiency

Source : Orphanet

Database :

DecipherGenomics PanelApp OMIM:602354 Orphanet:504523 HGNC:18874 PMID:27522155 GTEx Portal Human Protein Atlas Ensembl

PRR14 NM_024031.5   Whole gene - Size : 5,696 bases


pLI : 0.17 LOEUF : 0.47 sHet : 0.067 pHaplo : 0.19 pTriplo : 0.73
Location : 30,662,038 - 30,667,734

Database :

DecipherGenomics OMIM:617423 GTEx Portal Human Protein Atlas Ensembl

VKORC1 NM_024006.6   Whole gene - Size : 5,138 bases


pLI : 0.16 LOEUF : 1.02 sHet : 0.012 pHaplo : 0.12 pTriplo : 0.74
Location : 31,102,163 - 31,107,301

Disease : Hereditary combined deficiency of vitamin K-dependent clotting factors

Source : Orphanet

Database :

DecipherGenomics PanelApp OMIM:608547 Orphanet:98434 HGNC:23663 PMID:14765194 GTEx Portal Human Protein Atlas Ensembl

SULT1A2 NM_001054.4   Whole gene - Size : 5,107 bases


pLI : 0 LOEUF : 1.58 sHet : 0.006 pHaplo : 0.16 pTriplo : 0.32
Location : 28,603,264 - 28,608,371

Database :

DecipherGenomics OMIM:601292 GTEx Portal Human Protein Atlas Ensembl

SULT1A3 NM_177552.4   Whole gene - Size : 5,082 bases


pLI : 0.36 LOEUF : 1.79 pHaplo : 0.14 pTriplo : 0.53
Location : 30,210,549 - 30,215,631

Database :

DecipherGenomics OMIM:600641 GTEx Portal Human Protein Atlas Ensembl

MAZ NM_002383.4   Whole gene - Size : 5,058 bases


pLI : 0.93 LOEUF : 0.37 sHet : 0.16 pHaplo : 0.61 pTriplo : 0.84
Location : 29,817,427 - 29,822,485

Database :

DecipherGenomics OMIM:600999 GTEx Portal Human Protein Atlas Ensembl

CDIPT NM_006319.5   Whole gene - Size : 5,057 bases


pLI : 0.13 LOEUF : 0.79 sHet : 0.034 pHaplo : 0.04 pTriplo : 0.5
Location : 29,869,678 - 29,874,735

Database :

DecipherGenomics OMIM:605893 GTEx Portal Human Protein Atlas Ensembl

SULT1A4 NM_001017390.3   Whole gene - Size : 5,053 bases


pLI : 0.38 LOEUF : 1.74 pHaplo : 0.12 pTriplo : 0.59
Location : 29,471,234 - 29,476,287

Database :

DecipherGenomics OMIM:615819 GTEx Portal Human Protein Atlas Ensembl

CFAP119 NM_001014979.3   Whole gene - Size : 4,798 bases


pLI : 0 LOEUF : 1.18
Location : 30,768,744 - 30,773,542

Database :

DecipherGenomics OMIM:618318 GTEx Portal Human Protein Atlas Ensembl

ZG16 NM_152338.4   Whole gene - Size : 4,717 bases


pLI : 0.62 LOEUF : 0.65 pHaplo : 0.29 pTriplo : 0.59
Location : 29,789,577 - 29,794,294

Database :

DecipherGenomics OMIM:617311 GTEx Portal Human Protein Atlas Ensembl

ZNF764 NM_001172679.2   Whole gene - Size : 4,610 bases


pLI : 0 LOEUF : 1.17 pHaplo : 0.1 pTriplo : 0.64
Location : 30,565,085 - 30,569,695

Database :

DecipherGenomics OMIM:619524 GTEx Portal Human Protein Atlas Ensembl

YPEL3 NM_031477.5   Whole gene - Size : 4,601 bases


pLI : 0.04 LOEUF : 1.15 sHet : 0.026 pHaplo : 0.14 pTriplo : 0.57
Location : 30,103,635 - 30,108,236

Database :

DecipherGenomics OMIM:609724 GTEx Portal Human Protein Atlas Ensembl

C16orf92 NM_001109659.2   Whole gene - Size : 4,538 bases


pLI : 0.03 LOEUF : 1.26 sHet : 0.013 pHaplo : 0.14 pTriplo : 0.2
Location : 30,034,519 - 30,039,057

Database :

DecipherGenomics OMIM:618911 GTEx Portal Human Protein Atlas Ensembl

CD2BP2 NM_006110.3   Whole gene - Size : 4,535 bases


pLI : 0 LOEUF : 1.04 sHet : 0.009 pHaplo : 0.09 pTriplo : 0.47
Location : 30,362,094 - 30,366,629

Database :

DecipherGenomics OMIM:604470 GTEx Portal Human Protein Atlas Ensembl

PRRT2 NM_145239.3   Whole gene - Size : 4,510 bases

brain/cognition

pLI : 0.59 LOEUF : 0.56 sHet : 0.152 pHaplo : 0.39 pTriplo : 0.39
Location : 29,822,703 - 29,827,213

Disease : Paroxysmal exertion-induced dyskinesia

Source : Orphanet

Database :

DecipherGenomics PanelApp OMIM:614386 Orphanet:98811 HGNC:30500 PMID:22902309 PMID:22209761 PMID:23398397 GTEx Portal Human Protein Atlas Ensembl

APOBR NM_018690.4   Whole gene - Size : 4,321 bases


pLI : 0 LOEUF : 0.77 sHet : 0.049 pHaplo : 0.24 pTriplo : 0.23
Location : 28,505,964 - 28,510,285

Database :

DecipherGenomics OMIM:605220 GTEx Portal Human Protein Atlas Ensembl

PRSS8 NM_002773.5   Whole gene - Size : 4,294 bases


pLI : 0.1 LOEUF : 0.69 sHet : 0.042 pHaplo : 0.39 pTriplo : 0.45
Location : 31,142,754 - 31,147,048

Database :

DecipherGenomics OMIM:600823 GTEx Portal Human Protein Atlas Ensembl

HSD3B7 NM_025193.4   Whole gene - Size : 3,940 bases


pLI : 0 LOEUF : 1.33 sHet : 0.006 pHaplo : 0.17 pTriplo : 0.67
Location : 30,996,528 - 31,000,468

Disease : Congenital bile acid synthesis defect type 1

Source : Orphanet

Database :

DecipherGenomics PanelApp OMIM:607764 Orphanet:79301 HGNC:18324 PMID:12679481 GTEx Portal Human Protein Atlas Ensembl

TUFM NM_003321.5   Whole gene - Size : 3,937 bases

brain/cognition

pLI : 0 LOEUF : 0.74 sHet : 0.022 pHaplo : 0.17 pTriplo : 0.89
Location : 28,853,732 - 28,857,669

Disease : Combined oxidative phosphorylation defect type 4

Source : Orphanet

Database :

DecipherGenomics PanelApp OMIM:602389 Orphanet:254925 HGNC:12420 PMID:17160893 GTEx Portal Human Protein Atlas Ensembl

HIRIP3 NM_003609.5   Whole gene - Size : 3,744 bases


pLI : 0 LOEUF : 0.87 sHet : 0.094 pHaplo : 0.15 pTriplo : 0.66
Location : 30,003,651 - 30,007,395

Database :

DecipherGenomics OMIM:603365 GTEx Portal Human Protein Atlas Ensembl

SLX1B NM_024044.5   Whole gene - Size : 3,686 bases


pLI : 0.04 LOEUF : 1.72 pHaplo : 0.14 pTriplo : 0.81
Location : 29,465,854 - 29,469,540

Database :

DecipherGenomics OMIM:615823 GTEx Portal Human Protein Atlas Ensembl

SLX1A NM_001014999.3   Whole gene - Size : 3,686 bases


pLI : 0.12 LOEUF : 1.16 pHaplo : 0.13 pTriplo : 0.42
Location : 30,205,196 - 30,208,882

Database :

DecipherGenomics OMIM:615822 GTEx Portal Human Protein Atlas Ensembl

ZNF768 NM_024671.4   Whole gene - Size : 2,817 bases


pLI : 0.42 LOEUF : 0.5 sHet : 0.029 pHaplo : 0.14 pTriplo : 0.75
Location : 30,535,325 - 30,538,142

Database :

DecipherGenomics OMIM:618032 GTEx Portal Human Protein Atlas Ensembl

TP53TG3 NM_016212.5   Whole gene - Size : 2,637 bases



Location : 32,684,849 - 32,687,486

Database :

DecipherGenomics OMIM:617482 GTEx Portal Human Protein Atlas Ensembl

SEPHS2 NM_012248.4   Whole gene - Size : 2,243 bases


pLI : 0 LOEUF : 0.99 sHet : 0.012 pHaplo : 0.09 pTriplo : 0.77
Location : 30,454,952 - 30,457,195

Database :

DecipherGenomics OMIM:606218 GTEx Portal Human Protein Atlas Ensembl

PYCARD NM_013258.5   Whole gene - Size : 1,964 bases


pLI : 0 LOEUF : 1.9 sHet : 0.004 pHaplo : 0.17 pTriplo : 0.37
Location : 31,212,807 - 31,214,771

Database :

DecipherGenomics PanelApp OMIM:606838 GTEx Portal Human Protein Atlas Ensembl

PYDC1 NM_152901.4   Whole gene - Size : 1,173 bases


sHet : 0.067 pHaplo : 0.54 pTriplo : 0.43
Location : 31,227,283 - 31,228,456

Database :

DecipherGenomics OMIM:615700 GTEx Portal Human Protein Atlas Ensembl

AHSP NM_016633.4   Whole gene - Size : 903 bases


pLI : 0 LOEUF : 1.96 sHet : 0.007 pHaplo : 0.25 pTriplo : 0.13
Location : 31,539,221 - 31,540,124

Database :

DecipherGenomics OMIM:605821 GTEx Portal Human Protein Atlas Ensembl

BOLA2 NM_001031827.3   Whole gene - Size : 761 bases


pHaplo : 0.1 pTriplo : 0.41
Location : 29,464,911 - 29,465,672

Database :

DecipherGenomics PanelApp OMIM:613182 GTEx Portal Human Protein Atlas Ensembl

COX6A2 NM_005205.4   Whole gene - Size : 629 bases


pLI : 0.19 LOEUF : 1.58 pHaplo : 0.51 pTriplo : 0.64
Location : 31,439,052 - 31,439,681

Disease : Isolated cytochrome C oxidase deficiency

Source : Orphanet

Database :

DecipherGenomics PanelApp OMIM:602009 Orphanet:254905 HGNC:2279 PMID:31155743 GTEx Portal Human Protein Atlas Ensembl